Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_02205 | Not Available | Positive | 563151 - 563672 | 20098.9 |
| mechanosensitive ion channel | H9N25_02210 | P0C0S2 | Negative | 563775 - 565664 | 70561.2 |
| duf1080 domain-containing protein | H9N25_02215 | Not Available | Positive | 565904 - 566878 | 35399.5 |
| pepsy domain-containing protein | H9N25_02220 | Not Available | Negative | 567078 - 568649 | 58863.5 |
| rna polymerase sigma-70 factor | H9N25_02225 | P46358 | Positive | 568941 - 569543 | 23185.0 |
| fecr family protein | H9N25_02230 | Not Available | Positive | 569755 - 570912 | 42989.4 |
| doxx family membrane protein | H9N25_02235 | T2KPJ3 | Positive | 571115 - 574497 | 124023.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_02240 | T2KNB8 | Positive | 574508 - 576109 | 59863.5 |
| hypothetical protein | H9N25_02245 | Not Available | Positive | 576109 - 578145 | 74760.5 |
| fad-dependent oxidoreductase | H9N25_02250 | Not Available | Positive | 578148 - 580166 | 75122.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

