Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dinb family protein | H9N25_22405 | Not Available | Negative | 5416682 - 5417140 | 17897.5 |
| bifunctional aspartate kinase/homoserine dehydrogenase i | H9N25_22410 | O81852 | Negative | 5417145 - 5419598 | 89440.1 |
| phosphoenolpyruvate carboxykinase (atp) | H9N25_22415 | A5FK68 | Positive | 5420489 - 5422084 | 59060.7 |
| mota/tolq/exbb proton channel family protein | H9N25_22420 | Not Available | Positive | 5422384 - 5423214 | 29017.4 |
| biopolymer transporter exbd | H9N25_22425 | Not Available | Positive | 5423294 - 5423908 | 22464.5 |
| biopolymer transporter exbd | H9N25_22430 | Not Available | Positive | 5423912 - 5424418 | 18555.7 |
| tonb family protein | H9N25_22435 | Q9ZJP4 | Positive | 5424437 - 5425255 | 30088.3 |
| hypothetical protein | H9N25_22440 | Not Available | Positive | 5425262 - 5425489 | 8816.32 |
| substrate-binding domain-containing protein | H9N25_22445 | Not Available | Positive | 5425498 - 5426409 | 33899.2 |
| hypothetical protein | H9N25_22450 | Q3ZBZ8 | Positive | 5426555 - 5428276 | 63083.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

