Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_22355 | Not Available | Positive | 5404823 - 5405389 | 22926.7 |
| bax inhibitor-1/ycca family protein | H9N25_22360 | P0AAC5 | Positive | 5405427 - 5406182 | 27539.4 |
| methionine synthase | H9N25_22365 | Q9I2Q2 | Positive | 5406533 - 5410234 | 137118.0 |
| methylenetetrahydrofolate reductase | H9N25_22370 | O67422 | Positive | 5410309 - 5411262 | 35906.4 |
| aspartate aminotransferase family protein | H9N25_22375 | I0DFJ0 | Positive | 5411398 - 5412789 | 51066.6 |
| hypothetical protein | H9N25_22380 | Not Available | Positive | 5412835 - 5413137 | 11171.5 |
| tail fiber domain-containing protein | H9N25_22385 | Not Available | Positive | 5413215 - 5413628 | 15131.3 |
| hypothetical protein | H9N25_22390 | Not Available | Positive | 5413770 - 5414129 | 12409.7 |
| threonine synthase | H9N25_22395 | P44503 | Negative | 5414341 - 5415648 | 48299.7 |
| homoserine kinase | H9N25_22400 | B3QWX6 | Negative | 5415734 - 5416666 | 33094.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

