Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadp-dependent oxidoreductase | H9N25_22255 | Q7T3C7 | Negative | 5390063 - 5391064 | 36374.5 |
| sdr family nad(p)-dependent oxidoreductase | H9N25_22260 | P39577 | Negative | 5391086 - 5391853 | 28010.3 |
| doxx family membrane protein | H9N25_22265 | P39577 | Negative | 5392028 - 5392153 | 4331.34 |
| helix-turn-helix transcriptional regulator | H9N25_22270 | P72979 | Positive | 5392250 - 5392663 | 15747.4 |
| alpha/beta hydrolase | H9N25_22275 | Not Available | Negative | 5392923 - 5393972 | 39787.8 |
| hypothetical protein | H9N25_22280 | Not Available | Negative | 5394025 - 5394216 | 7100.62 |
| Trna-glu | Not Available | Not Available | Positive | 5394402 - 5394476 | Not Available |
| Trna-met | Not Available | Not Available | Positive | 5394508 - 5394583 | Not Available |
| Trna-glu | Not Available | Not Available | Positive | 5394670 - 5394744 | Not Available |
| Trna-met | Not Available | Not Available | Positive | 5394813 - 5394888 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

