Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rok family protein | H9N25_22205 | Q44406 | Negative | 5373768 - 5375021 | 45899.6 |
| gfo/idh/moca family oxidoreductase | H9N25_22210 | B5F3F4 | Positive | 5375247 - 5376533 | 48237.6 |
| duf1080 domain-containing protein | H9N25_22215 | Not Available | Positive | 5376557 - 5380030 | 124790.0 |
| gfo/idh/moca family oxidoreductase | H9N25_22220 | A8H2K3 | Positive | 5380060 - 5381514 | 53819.4 |
| gfo/idh/moca family oxidoreductase | H9N25_22225 | Q6M0B9 | Positive | 5381523 - 5382608 | 40269.9 |
| tetratricopeptide repeat protein | H9N25_22230 | Not Available | Positive | 5382834 - 5386562 | 141513.0 |
| helix-turn-helix transcriptional regulator | H9N25_22235 | P37486 | Positive | 5386829 - 5387227 | 15119.5 |
| ribosome small subunit-dependent gtpase a | H9N25_22240 | Q8A8H7 | Positive | 5387540 - 5388592 | 39848.7 |
| crp/fnr family transcriptional regulator | H9N25_22245 | Not Available | Positive | 5388849 - 5389418 | 22362.9 |
| hypothetical protein | H9N25_22250 | Not Available | Positive | 5389514 - 5389975 | 17307.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

