Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pirin family protein | H9N25_22155 | P58114 | Negative | 5365164 - 5366054 | 33574.3 |
| nadh:flavin oxidoreductase | H9N25_22160 | Q6Z965 | Negative | 5366586 - 5367686 | 40089.3 |
| helix-turn-helix transcriptional regulator | H9N25_22165 | C0H3S9 | Negative | 5367698 - 5368000 | 11437.7 |
| hypothetical protein | H9N25_22170 | Not Available | Negative | 5368503 - 5369036 | 19724.2 |
| helix-turn-helix transcriptional regulator | H9N25_22175 | P96673 | Negative | 5369132 - 5369530 | 15185.3 |
| sdr family nad(p)-dependent oxidoreductase | H9N25_22180 | A6SSW9 | Positive | 5369942 - 5370820 | 31726.8 |
| helix-turn-helix transcriptional regulator | H9N25_22185 | P26993 | Positive | 5370946 - 5371749 | 30832.7 |
| cdgsh iron-sulfur domain-containing protein | H9N25_22190 | B3RML8 | Negative | 5371812 - 5372036 | 8131.68 |
| gnat family n-acetyltransferase | H9N25_22195 | I6YG32 | Negative | 5372121 - 5372804 | 25779.1 |
| alpha/beta hydrolase | H9N25_22200 | Q86WA6 | Negative | 5372883 - 5373665 | 28564.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

