Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoglycerate dehydrogenase | H9N25_22105 | O27051 | Positive | 5356564 - 5357490 | 34509.5 |
| hypothetical protein | H9N25_22110 | Not Available | Positive | 5357649 - 5358107 | 17540.6 |
| osmc family protein | H9N25_22115 | Not Available | Positive | 5358247 - 5358723 | 17606.7 |
| m1 family metallopeptidase | H9N25_22120 | Not Available | Negative | 5358792 - 5360672 | 70901.2 |
| transcription elongation factor grea | H9N25_22125 | A5FJJ8 | Positive | 5361007 - 5361480 | 17170.6 |
| hit family protein | H9N25_22130 | P0A5B6 | Positive | 5361556 - 5361954 | 14629.1 |
| hypothetical protein | H9N25_22135 | Not Available | Negative | 5362012 - 5362872 | 30641.4 |
| sigma-70 family rna polymerase sigma factor | H9N25_22140 | P44790 | Positive | 5363062 - 5363688 | 23993.7 |
| hypothetical protein | H9N25_22145 | Not Available | Positive | 5363685 - 5364869 | 43343.8 |
| n-acetyltransferase | H9N25_22150 | P39274 | Negative | 5364876 - 5365157 | 10282.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

