Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| m20/m25/m40 family metallo-hydrolase | H9N25_22055 | Q6IRK9 | Negative | 5343848 - 5345413 | 56930.2 |
| abc transporter permease | H9N25_22060 | Not Available | Negative | 5345536 - 5346333 | 30263.0 |
| abc transporter atp-binding protein | H9N25_22065 | P42332 | Negative | 5346335 - 5347243 | 32995.5 |
| hypothetical protein | H9N25_22070 | Not Available | Negative | 5347249 - 5347419 | 6120.82 |
| sensor histidine kinase | H9N25_22075 | Q5HKE1 | Positive | 5347826 - 5348800 | 37539.9 |
| response regulator transcription factor | H9N25_22080 | Q82Z76 | Positive | 5348861 - 5349610 | 28453.7 |
| 1-acyl-sn-glycerol-3-phosphate acyltransferase | H9N25_22085 | Q8GXU8 | Negative | 5349685 - 5350449 | 28779.5 |
| nudix hydrolase | H9N25_22090 | I6X235 | Negative | 5350772 - 5351326 | 20903.1 |
| doxx family membrane protein | H9N25_22095 | Not Available | Negative | 5351355 - 5353783 | 88869.5 |
| tonb-dependent receptor | H9N25_22100 | O52903 | Negative | 5353840 - 5356323 | 91542.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

