Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fumarate reductase/succinate dehydrogenase flavoprotein subunit | H9N25_22005 | P08065 | Positive | 5333651 - 5335630 | 73192.7 |
| succinate dehydrogenase/fumarate reductase iron-sulfur subunit | H9N25_22010 | P08066 | Positive | 5335742 - 5336512 | 27831.4 |
| energy transducer tonb | H9N25_22015 | Not Available | Negative | 5337011 - 5337409 | 14836.2 |
| tonb-dependent receptor plug domain-containing protein | H9N25_22020 | T2KMI3 | Negative | 5337436 - 5338065 | 22466.3 |
| tonb family protein | H9N25_22025 | T2KM18 | Negative | 5338071 - 5340056 | 74390.2 |
| blai/meci/copy family transcriptional regulator | H9N25_22030 | P68261 | Negative | 5340053 - 5340430 | 14718.9 |
| response regulator transcription factor | H9N25_22035 | P54662 | Negative | 5340641 - 5341282 | 23838.1 |
| hypothetical protein | H9N25_22040 | Q4L8Q7 | Negative | 5341287 - 5342054 | 28829.3 |
| hypothetical protein | H9N25_22045 | Not Available | Negative | 5342751 - 5343200 | 16706.9 |
| helix-turn-helix transcriptional regulator | H9N25_22050 | Q7WZY4 | Positive | 5343519 - 5343749 | 8968.02 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

