Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux transporter outer membrane subunit | H9N25_21955 | Q9ZHD2 | Negative | 5320988 - 5322388 | 51023.8 |
| efflux rnd transporter permease subunit | H9N25_21960 | Q8G2M6 | Negative | 5322399 - 5325575 | 114732.0 |
| efflux rnd transporter periplasmic adaptor subunit | H9N25_21965 | P0AE07 | Negative | 5325624 - 5326763 | 40519.5 |
| diaminopimelate epimerase | H9N25_21970 | A6GYX5 | Negative | 5327210 - 5327992 | 29015.4 |
| trypsin-like peptidase domain-containing protein | H9N25_21975 | F6AA62 | Positive | 5328308 - 5329858 | 53925.1 |
| four-helix bundle copper-binding protein | H9N25_21980 | O07571 | Negative | 5329918 - 5330262 | 12688.1 |
| hypothetical protein | H9N25_21985 | Not Available | Positive | 5330528 - 5331031 | 19526.4 |
| cold-shock protein | H9N25_21990 | P57407 | Positive | 5331313 - 5331504 | 6904.04 |
| tlpa family protein disulfide reductase | H9N25_21995 | Q63DQ8 | Negative | 5331594 - 5332715 | 42738.0 |
| succinate dehydrogenase cytochrome b subunit | H9N25_22000 | Not Available | Positive | 5332953 - 5333633 | 25114.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

