Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| upxy family transcription antiterminator | H9N25_02155 | O51355 | Negative | 550205 - 550708 | 19251.7 |
| polysaccharide biosynthesis tyrosine autokinase | H9N25_02160 | Q8X7L9 | Negative | 550829 - 553228 | 89442.9 |
| polysaccharide biosynthesis/export family protein | H9N25_02165 | P0A931 | Negative | 553230 - 554042 | 29868.5 |
| hypothetical protein | H9N25_02170 | Not Available | Positive | 555364 - 555780 | 14992.0 |
| hypothetical protein | H9N25_02175 | Not Available | Positive | 556180 - 556560 | 14521.0 |
| glycosyltransferase | H9N25_02180 | P9WMX8 | Positive | 557588 - 558328 | 28066.8 |
| undecaprenyl/decaprenyl-phosphate alpha-n-acetylglucosaminyl 1-phosphate transferase | H9N25_02185 | A0R211 | Positive | 558672 - 559586 | 32840.3 |
| type i glyceraldehyde-3-phosphate dehydrogenase | H9N25_02190 | Q829W3 | Positive | 559696 - 560691 | 35723.9 |
| gnat family n-acetyltransferase | H9N25_02195 | O06744 | Positive | 561333 - 561770 | 16456.7 |
| doxx family membrane protein | H9N25_02200 | Q8A753 | Positive | 561777 - 562969 | 43572.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

