Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| app1 family protein | H9N25_21905 | P53933 | Positive | 5310091 - 5311062 | 37522.9 |
| yccf domain-containing protein | H9N25_21910 | P0AB12 | Negative | 5311376 - 5311744 | 13466.2 |
| hypothetical protein | H9N25_21915 | Not Available | Positive | 5311851 - 5312204 | 13349.1 |
| duf1501 domain-containing protein | H9N25_21920 | Not Available | Negative | 5312360 - 5313559 | 44856.1 |
| duf1800 domain-containing protein | H9N25_21925 | Not Available | Negative | 5313696 - 5315138 | 54908.6 |
| leucyl/phenylalanyl-trna--protein transferase | H9N25_21930 | A5FJI6 | Positive | 5315212 - 5315844 | 23772.6 |
| duf1211 domain-containing protein | H9N25_21935 | A0A086F3E3 | Negative | 5315847 - 5316449 | 22558.1 |
| duf1080 domain-containing protein | H9N25_21940 | Not Available | Negative | 5316557 - 5317339 | 28806.9 |
| duf2892 domain-containing protein | H9N25_21945 | Not Available | Negative | 5317404 - 5317721 | 11574.7 |
| dead/deah box helicase | H9N25_21950 | P94593 | Negative | 5317856 - 5320747 | 111655.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

