Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| anthranilate synthase component i family protein | H9N25_21855 | O66849 | Positive | 5301857 - 5303254 | 53397.2 |
| aminodeoxychorismate/anthranilate synthase component ii | H9N25_21860 | P00903 | Positive | 5303307 - 5303897 | 22083.4 |
| indole-3-glycerol phosphate synthase trpc | H9N25_21865 | Q8AAD6 | Positive | 5304016 - 5304798 | 28668.5 |
| gtpase hflx | H9N25_21870 | A6H294 | Positive | 5304876 - 5306066 | 45120.3 |
| 30s ribosome-binding factor rbfa | H9N25_21875 | Q11P01 | Positive | 5306157 - 5306534 | 14397.1 |
| hemolysin iii family protein | H9N25_21880 | P54176 | Positive | 5306540 - 5307169 | 24079.2 |
| peptidoglycan dd-metalloendopeptidase family protein | H9N25_21885 | Not Available | Positive | 5307176 - 5307862 | 25762.4 |
| tonb family protein | H9N25_21890 | Not Available | Positive | 5308129 - 5308782 | 24411.4 |
| hypothetical protein | H9N25_21895 | Not Available | Positive | 5308783 - 5309172 | 15250.2 |
| yegs/rv2252/bmru family lipid kinase | H9N25_21900 | Q1QUK4 | Negative | 5309161 - 5310033 | 32105.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

