Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | H9N25_21805 | T2KPM5 | Positive | 5285218 - 5287092 | 70524.1 |
| mfs transporter | H9N25_21810 | Q83SB6 | Positive | 5287258 - 5288559 | 47764.6 |
| pldc n-terminal domain-containing protein | H9N25_21815 | Not Available | Negative | 5288883 - 5289098 | 8120.54 |
| abc transporter atp-binding protein | H9N25_21820 | Q9CHL8 | Negative | 5289118 - 5290869 | 65062.5 |
| tonb-dependent receptor | H9N25_21825 | P38370 | Negative | 5290970 - 5294173 | 117258.0 |
| hypothetical protein | H9N25_21830 | Not Available | Positive | 5294613 - 5295776 | 44664.3 |
| hypothetical protein | H9N25_21835 | Not Available | Positive | 5295794 - 5296429 | 24889.7 |
| amidohydrolase family protein | H9N25_21840 | Q67JH7 | Negative | 5296593 - 5297858 | 45409.1 |
| amidohydrolase family protein | H9N25_21845 | A0A0F7GG06 | Negative | 5297905 - 5300925 | 109629.0 |
| cytochrome b | H9N25_21850 | Not Available | Positive | 5301038 - 5301484 | 16391.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

