Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | H9N25_21755 | Q6AJW3 | Negative | 5269959 - 5271776 | 67233.0 |
| glycosyltransferase family 4 protein | H9N25_21760 | Q58577 | Negative | 5272034 - 5273095 | 40741.3 |
| glycosyltransferase family 2 protein | H9N25_21765 | Not Available | Negative | 5273144 - 5274019 | 34476.3 |
| methylmalonyl co-a mutase-associated gtpase meab | H9N25_21770 | Q9V225 | Positive | 5274078 - 5274977 | 32757.8 |
| doxx family membrane protein | H9N25_21775 | Not Available | Negative | 5275021 - 5276309 | 47711.3 |
| ompa family protein | H9N25_21780 | P22263 | Positive | 5276481 - 5277824 | 47654.8 |
| rida family protein | H9N25_21785 | O58584 | Positive | 5278071 - 5278451 | 13645.4 |
| eama family transporter | H9N25_21790 | O31859 | Positive | 5278454 - 5279356 | 34201.6 |
| atp-dependent dna helicase recg | H9N25_21795 | Q55681 | Positive | 5279363 - 5281468 | 80024.8 |
| tonb-dependent receptor | H9N25_21800 | T2KM18 | Positive | 5281999 - 5285184 | 117616.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

