Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcription termination/antitermination protein nusa | H9N25_21705 | P48514 | Positive | 5258205 - 5259449 | 46983.8 |
| translation initiation factor if-2 | H9N25_21710 | Q11PK5 | Positive | 5259512 - 5262604 | 111465.0 |
| hypothetical protein | H9N25_21715 | Not Available | Positive | 5262711 - 5262950 | 9175.23 |
| acyltransferase family protein | H9N25_21720 | Not Available | Positive | 5263356 - 5263817 | 18059.0 |
| hypothetical protein | H9N25_21725 | Not Available | Positive | 5264015 - 5264443 | 16412.7 |
| glycosyltransferase | H9N25_21730 | Q57287 | Negative | 5264446 - 5265450 | 38828.5 |
| glycosyltransferase family 4 protein | H9N25_21735 | P42982 | Positive | 5265652 - 5266761 | 41888.0 |
| glycoside hydrolase family 99-like domain-containing protein | H9N25_21740 | B0RVK2 | Negative | 5266797 - 5267927 | 44737.9 |
| hypothetical protein | H9N25_21745 | Not Available | Negative | 5267979 - 5268773 | 31175.6 |
| glycosyltransferase family 4 protein | H9N25_21750 | Q48455 | Negative | 5268784 - 5269950 | 44845.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

