Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| single-stranded dna-binding protein | H9N25_21655 | P66848 | Positive | 5249967 - 5250404 | 16313.3 |
| duf4270 domain-containing protein | H9N25_21660 | Not Available | Negative | 5250537 - 5251967 | 51233.9 |
| glycogen/starch synthase | H9N25_21665 | Q3B6C3 | Negative | 5251990 - 5252820 | 31742.0 |
| pantoate--beta-alanine ligase | H9N25_21670 | Q7MWV8 | Positive | 5252964 - 5253809 | 31377.2 |
| aspartate 1-decarboxylase | H9N25_21675 | A6L8I7 | Positive | 5253970 - 5254320 | 12799.6 |
| flippase-like domain-containing protein | H9N25_21680 | Not Available | Positive | 5254325 - 5255302 | 36975.5 |
| acyl-coa dehydrogenase | H9N25_21685 | P45867 | Positive | 5255617 - 5256756 | 41647.0 |
| phage holin family protein | H9N25_21690 | O34648 | Negative | 5256822 - 5257166 | 12049.5 |
| hypothetical protein | H9N25_21695 | Not Available | Positive | 5257185 - 5257616 | 15839.2 |
| ribosome assembly cofactor rimp | H9N25_21700 | A6GWV6 | Positive | 5257738 - 5258202 | 17216.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

