Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| had-ib family phosphatase | H9N25_21605 | O82796 | Positive | 5237953 - 5239254 | 49257.4 |
| voltage-gated chloride channel family protein | H9N25_21610 | Q87WD2 | Negative | 5239317 - 5240606 | 45989.5 |
| tryptophan 2,3-dioxygenase | H9N25_21615 | Q1GEF8 | Positive | 5240753 - 5241718 | 37717.3 |
| branched-chain amino acid aminotransferase | H9N25_21620 | Q6GJB4 | Positive | 5241864 - 5242928 | 39494.0 |
| duf4920 domain-containing protein | H9N25_21625 | Not Available | Negative | 5243097 - 5243561 | 17107.2 |
| dna repair protein rada | H9N25_21630 | P37572 | Negative | 5243886 - 5245262 | 50215.6 |
| rne/rng family ribonuclease | H9N25_21635 | P0A9J2 | Negative | 5245659 - 5247209 | 58706.5 |
| tetratricopeptide repeat protein | H9N25_21640 | Not Available | Negative | 5247488 - 5248366 | 31153.5 |
| integration host factor subunit beta | H9N25_21645 | P36206 | Negative | 5248376 - 5248678 | 11090.6 |
| a/g-specific adenine glycosylase | H9N25_21650 | P83847 | Positive | 5248849 - 5249910 | 41130.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

