Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dctp deaminase | H9N25_21555 | B2TNM9 | Positive | 5226656 - 5227192 | 20058.1 |
| doxx family membrane protein | H9N25_21560 | Not Available | Positive | 5228142 - 5230597 | 90837.2 |
| enoyl-coa hydratase/isomerase family protein | H9N25_21565 | P42125 | Positive | 5230696 - 5231457 | 28028.0 |
| sdr family oxidoreductase | H9N25_21570 | Q16698 | Positive | 5231623 - 5232504 | 31554.2 |
| phosphoribosylamine--glycine ligase | H9N25_21575 | P57829 | Positive | 5232570 - 5233841 | 45330.5 |
| smi1/knr4 family protein | H9N25_21580 | Not Available | Positive | 5233853 - 5234359 | 19102.5 |
| tlpa family protein disulfide reductase | H9N25_21585 | Q73B22 | Negative | 5234426 - 5235052 | 22606.0 |
| duf4369 domain-containing protein | H9N25_21590 | Not Available | Negative | 5235013 - 5235579 | 20046.3 |
| formimidoylglutamase | H9N25_21595 | Q4L8J3 | Negative | 5235738 - 5236919 | 44912.8 |
| nad-dependent epimerase/dehydratase family protein | H9N25_21600 | P73212 | Positive | 5236991 - 5237953 | 35195.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

