Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| doxx family membrane protein | H9N25_21455 | P80874 | Positive | 5207587 - 5208576 | 36639.5 |
| nadh:flavin oxidoreductase/nadh oxidase | H9N25_21460 | Q928C2 | Positive | 5208672 - 5209751 | 39390.7 |
| tonb-dependent receptor | H9N25_21465 | Q9JZN9 | Negative | 5209881 - 5212193 | 84777.1 |
| tlpa family protein disulfide reductase | H9N25_21470 | A0RBT0 | Positive | 5212817 - 5213389 | 21646.7 |
| gnat family n-acetyltransferase | H9N25_21475 | A4IGD2 | Positive | 5213503 - 5214006 | 18708.7 |
| winged helix-turn-helix transcriptional regulator | H9N25_21480 | Not Available | Positive | 5214006 - 5214488 | 18350.4 |
| nucleoid-associated protein | H9N25_21485 | Not Available | Positive | 5214552 - 5215610 | 41569.6 |
| transposase | H9N25_21490 | Not Available | Positive | 5215788 - 5216309 | 21001.4 |
| doxx family membrane protein | H9N25_21495 | P94475 | Negative | 5216412 - 5217757 | 51441.1 |
| doxx family membrane protein | H9N25_21500 | P94474 | Negative | 5217875 - 5218840 | 35858.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

