Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_21355 | Not Available | Positive | 5189133 - 5189333 | 7460.58 |
| lyttr family transcriptional regulator | H9N25_21360 | Not Available | Positive | 5189323 - 5189943 | 23244.5 |
| histidine--trna ligase | H9N25_21365 | A0M0E2 | Positive | 5190094 - 5191626 | 56764.5 |
| class i sam-dependent methyltransferase | H9N25_21370 | Q55EX9 | Negative | 5191733 - 5192470 | 28480.7 |
| mfs transporter | H9N25_21375 | P0AEX3 | Positive | 5192628 - 5193926 | 47676.9 |
| voc family protein | H9N25_21380 | Q54L71 | Negative | 5194283 - 5194663 | 14326.4 |
| replication-associated recombination protein a | H9N25_21385 | P39918 | Positive | 5194794 - 5196074 | 47085.6 |
| hypothetical protein | H9N25_21390 | Not Available | Positive | 5196141 - 5197613 | 56404.5 |
| abc transporter atp-binding protein | H9N25_21395 | C0SPB4 | Positive | 5197616 - 5198308 | 25846.9 |
| ompa family protein | H9N25_21400 | Q05146 | Positive | 5198487 - 5199164 | 23148.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

