Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3738 domain-containing protein | H9N25_21305 | O31820 | Positive | 5178737 - 5179939 | 45257.9 |
| hypothetical protein | H9N25_21310 | Not Available | Negative | 5179978 - 5180325 | 13228.6 |
| superoxide dismutase family protein | H9N25_21315 | O67149 | Positive | 5180445 - 5180975 | 18812.1 |
| biopolymer transporter exbd | H9N25_21320 | Not Available | Positive | 5181170 - 5181700 | 19489.9 |
| bacteriocin | H9N25_21325 | Not Available | Positive | 5182007 - 5182213 | 7210.79 |
| hlyd family efflux transporter periplasmic adaptor subunit | H9N25_21330 | J7QCA7 | Positive | 5182276 - 5183436 | 43682.6 |
| peptidase domain-containing abc transporter | H9N25_21335 | P59852 | Positive | 5183442 - 5185553 | 78544.2 |
| methionine adenosyltransferase | H9N25_21340 | A5FJU1 | Negative | 5186058 - 5187308 | 45865.4 |
| diacylglycerol kinase family lipid kinase | H9N25_21345 | Q87IB3 | Positive | 5187513 - 5188415 | 33022.3 |
| translation initiation factor | H9N25_21350 | P0A2G8 | Positive | 5188546 - 5188920 | 13761.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

