Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_21255 | Not Available | Positive | 5168136 - 5169029 | 35227.2 |
| lysr family transcriptional regulator | H9N25_21260 | Q04778 | Negative | 5169062 - 5169955 | 34537.3 |
| histidine ammonia-lyase | H9N25_21265 | B2A3D9 | Positive | 5170032 - 5171576 | 55670.7 |
| urocanate hydratase | H9N25_21270 | Q86AX3 | Positive | 5171588 - 5173594 | 73772.8 |
| lysr family transcriptional regulator | H9N25_21275 | P52659 | Negative | 5173641 - 5174543 | 34243.4 |
| nad(p)h-dependent oxidoreductase | H9N25_21280 | P0AEY7 | Positive | 5174643 - 5175272 | 24066.2 |
| antibiotic biosynthesis monooxygenase | H9N25_21285 | P94425 | Positive | 5175244 - 5175528 | 10797.9 |
| dmt family transporter | H9N25_21290 | E1W9W8 | Negative | 5175529 - 5176380 | 29689.1 |
| response regulator transcription factor | H9N25_21295 | Q9AE24 | Negative | 5176433 - 5177128 | 26450.5 |
| hamp domain-containing histidine kinase | H9N25_21300 | Q08408 | Negative | 5177116 - 5178618 | 57921.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

