Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf5458 family protein | H9N25_21155 | Not Available | Positive | 5143457 - 5144845 | 52652.6 |
| nad(p)h-dependent oxidoreductase | H9N25_21160 | Not Available | Positive | 5144999 - 5145541 | 20586.9 |
| type vi secretion system needle protein hcp | H9N25_21165 | Not Available | Positive | 5145858 - 5146253 | 14672.5 |
| type vi secretion system needle protein hcp | H9N25_21170 | Not Available | Positive | 5146353 - 5146748 | 14597.2 |
| type iv secretion protein rhs | H9N25_21175 | K7WKL8 | Positive | 5147096 - 5148958 | 69246.4 |
| hypothetical protein | H9N25_21180 | Not Available | Positive | 5148961 - 5149185 | 8443.41 |
| hypothetical protein | H9N25_21185 | Not Available | Positive | 5149666 - 5150652 | 38478.8 |
| duf4280 domain-containing protein | H9N25_21190 | Not Available | Positive | 5150664 - 5151143 | 17072.3 |
| ompa family protein | H9N25_21195 | Q89AJ5 | Positive | 5151170 - 5154580 | 127040.0 |
| hypothetical protein | H9N25_21200 | Not Available | Positive | 5154583 - 5155347 | 29195.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

