Pedobacter riviphilus SW-16

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter riviphilus SW-16 is a species of bacteria characterized by the presence of flagella, which suggests that it is motile and capable of moving through its environment. This motility can be advantageous for locating nutrients or evading unfavorable conditions. Genomically, it is notable for having a single replicon, indicating a streamlined genetic structure that can facilitate efficient replication and maintenance of its genetic material. The genomic information for Pedobacter riviphilus SW-16 is accessible via the accession number CP061171.1, providing a resource for researchers interested in its genetic makeup and potential applications. The traits of this bacterium align it with other members of the Pedobacter genus, which are often found in diverse ecological niches, including soil and aquatic environments. In terms of ecological insight, the motility conferred by flagella may enable Pedobacter riviphilus SW-16 to thrive in dynamic environments, where the ability to move towards more favorable conditions can be crucial for survival. This adaptability could allow it to play a role in nutrient cycling and the breakdown of organic matter within its habitat, thereby contributing to ecosystem health and stability. Understanding the characteristics of Pedobacter riviphilus SW-16 may help illuminate its ecological roles and interactions within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter riviphilus
StrainSW-16

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter riviphilus SW-16, Complete Genome

Gene Summary

Adenine Count

1802189 bp

Thymine Count

1779389 bp

Guanine Count

1131489 bp

Cytosine Count

1112294 bp

Genome Length

5825361 bp

Protein-coding Genes

4781 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tssn family type vi secretion system proteinH9N25_21105Not AvailableNegative5130491 - 513138434861.1
type vi secretion system baseplate subunit tssgH9N25_21110Not AvailablePositive5131502 - 513244035789.7
type vi secretion system baseplate subunit tssfH9N25_21115Not AvailableNegative5133463 - 513532871312.5
gpw/gp25 family proteinH9N25_21120Not AvailableNegative5135355 - 513578916864.2
hypothetical proteinH9N25_21125Not AvailablePositive5135969 - 513649020119.1
type vi secretion system transmembrane protein tssoH9N25_21130Not AvailablePositive5136500 - 513698519114.9
pkd domain-containing proteinH9N25_21135Q46085Positive5137016 - 513799636160.0
type vi secretion system protein tssrH9N25_21140Not AvailablePositive5138038 - 514041388228.6
atp-dependent clp protease atp-binding subunitH9N25_21145Q6N1H2Positive5140419 - 514293593539.6
hypothetical proteinH9N25_21150Not AvailablePositive5142992 - 514343816789.8

Displaying genes 4221 – 4230 of 4847 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.