Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 92 protein | H9N25_21005 | O86365 | Positive | 5107629 - 5109896 | 84049.8 |
| glycosyl hydrolase | H9N25_21010 | Q5H7P5 | Positive | 5110077 - 5112683 | 98459.1 |
| (2fe-2s)-binding protein | H9N25_21015 | D5IGG4 | Negative | 5113356 - 5113682 | 11860.2 |
| doxx family membrane protein | H9N25_21020 | A0LXL9 | Negative | 5113726 - 5114735 | 35816.0 |
| hypothetical protein | H9N25_21025 | Not Available | Negative | 5114921 - 5115541 | 23824.4 |
| s9 family peptidase | H9N25_21030 | P27028 | Negative | 5115554 - 5117680 | 79380.2 |
| udp-2,3-diacylglucosamine diphosphatase | H9N25_21035 | B0UVZ2 | Positive | 5117826 - 5118575 | 29045.6 |
| peptide chain release factor 1 | H9N25_21040 | Q7MXT5 | Positive | 5119641 - 5120714 | 40138.9 |
| Trna-asp | Not Available | Not Available | Positive | 5120818 - 5120891 | Not Available |
| hypothetical protein | H9N25_21050 | Not Available | Positive | 5121065 - 5121235 | 6361.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

