Pedobacter riviphilus SW-16

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter riviphilus SW-16 is a species of bacteria characterized by the presence of flagella, which suggests that it is motile and capable of moving through its environment. This motility can be advantageous for locating nutrients or evading unfavorable conditions. Genomically, it is notable for having a single replicon, indicating a streamlined genetic structure that can facilitate efficient replication and maintenance of its genetic material. The genomic information for Pedobacter riviphilus SW-16 is accessible via the accession number CP061171.1, providing a resource for researchers interested in its genetic makeup and potential applications. The traits of this bacterium align it with other members of the Pedobacter genus, which are often found in diverse ecological niches, including soil and aquatic environments. In terms of ecological insight, the motility conferred by flagella may enable Pedobacter riviphilus SW-16 to thrive in dynamic environments, where the ability to move towards more favorable conditions can be crucial for survival. This adaptability could allow it to play a role in nutrient cycling and the breakdown of organic matter within its habitat, thereby contributing to ecosystem health and stability. Understanding the characteristics of Pedobacter riviphilus SW-16 may help illuminate its ecological roles and interactions within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter riviphilus
StrainSW-16

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter riviphilus SW-16, Complete Genome

Gene Summary

Adenine Count

1802189 bp

Thymine Count

1779389 bp

Guanine Count

1131489 bp

Cytosine Count

1112294 bp

Genome Length

5825361 bp

Protein-coding Genes

4781 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ragb/susd family nutrient uptake outer membrane proteinH9N25_20955T2KN63Positive5093493 - 509533769085.5
pqq-binding-like beta-propeller repeat proteinH9N25_20960D5V0N9Negative5095405 - 509723768084.2
tonb-dependent receptor plug domain-containing proteinH9N25_20965T2KM18Positive5097615 - 509853532060.3
tonb-dependent receptorH9N25_20970T2KPJ3Positive5098739 - 510065870189.8
susd/ragb family nutrient-binding outer membrane lipoproteinH9N25_20975Not AvailablePositive5100669 - 510226458870.5
n-acetylmuramoyl-l-alanine amidaseH9N25_20980Not AvailablePositive5102357 - 510298923996.2
port family proteinH9N25_20985Not AvailableNegative5103008 - 510361021692.9
hypothetical proteinH9N25_20990Not AvailablePositive5103871 - 51040868383.15
s41 family peptidaseH9N25_20995Q44879Positive5104265 - 510595662175.5
alpha-l-fucosidaseH9N25_21000Q9BTY2Positive5105985 - 510731050658.5

Displaying genes 4191 – 4200 of 4847 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.