Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | H9N25_20955 | T2KN63 | Positive | 5093493 - 5095337 | 69085.5 |
| pqq-binding-like beta-propeller repeat protein | H9N25_20960 | D5V0N9 | Negative | 5095405 - 5097237 | 68084.2 |
| tonb-dependent receptor plug domain-containing protein | H9N25_20965 | T2KM18 | Positive | 5097615 - 5098535 | 32060.3 |
| tonb-dependent receptor | H9N25_20970 | T2KPJ3 | Positive | 5098739 - 5100658 | 70189.8 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | H9N25_20975 | Not Available | Positive | 5100669 - 5102264 | 58870.5 |
| n-acetylmuramoyl-l-alanine amidase | H9N25_20980 | Not Available | Positive | 5102357 - 5102989 | 23996.2 |
| port family protein | H9N25_20985 | Not Available | Negative | 5103008 - 5103610 | 21692.9 |
| hypothetical protein | H9N25_20990 | Not Available | Positive | 5103871 - 5104086 | 8383.15 |
| s41 family peptidase | H9N25_20995 | Q44879 | Positive | 5104265 - 5105956 | 62175.5 |
| alpha-l-fucosidase | H9N25_21000 | Q9BTY2 | Positive | 5105985 - 5107310 | 50658.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

