Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| response regulator transcription factor | H9N25_20855 | Q9AE24 | Positive | 5061800 - 5062495 | 26548.1 |
| 1,4-dihydroxy-6-naphthoate synthase | H9N25_20860 | Q5SI12 | Negative | 5062554 - 5063402 | 31759.2 |
| futalosine hydrolase | H9N25_20865 | Q9KXN0 | Negative | 5063520 - 5064143 | 22793.3 |
| 6-carboxytetrahydropterin synthase | H9N25_20870 | Q5REZ5 | Positive | 5064256 - 5064666 | 15799.7 |
| gtp cyclohydrolase i fole | H9N25_20875 | A6LFE8 | Positive | 5064679 - 5065314 | 23943.9 |
| acp s-malonyltransferase | H9N25_20880 | P71019 | Positive | 5065401 - 5066282 | 30902.3 |
| hamp domain-containing histidine kinase | H9N25_20885 | Q9ZCU7 | Positive | 5066373 - 5070104 | 141929.0 |
| hypothetical protein | H9N25_20890 | Not Available | Negative | 5070145 - 5071047 | 34084.5 |
| family 10 glycosylhydrolase | H9N25_20895 | O35015 | Positive | 5071254 - 5072798 | 58855.9 |
| laci family dna-binding transcriptional regulator | H9N25_20900 | P46828 | Negative | 5072806 - 5073825 | 37395.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

