Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tigr03915 family putative dna repair protein | H9N25_20805 | Not Available | Negative | 5053313 - 5054077 | 29887.7 |
| putative dna modification/repair radical sam protein | H9N25_20810 | Not Available | Negative | 5054107 - 5055363 | 47735.0 |
| hypothetical protein | H9N25_20815 | Not Available | Negative | 5055457 - 5055819 | 14047.6 |
| hypothetical protein | H9N25_20820 | Not Available | Positive | 5055827 - 5055976 | 5670.86 |
| hd domain-containing protein | H9N25_20825 | P54168 | Negative | 5056070 - 5056714 | 24026.7 |
| helix-turn-helix transcriptional regulator | H9N25_20830 | P45902 | Negative | 5056788 - 5057069 | 10582.8 |
| hypothetical protein | H9N25_20835 | Not Available | Negative | 5057372 - 5057866 | 19400.0 |
| class i sam-dependent rna methyltransferase | H9N25_20840 | Q3A2U5 | Negative | 5057934 - 5059112 | 43961.0 |
| duf3127 domain-containing protein | H9N25_20845 | Not Available | Positive | 5059184 - 5059549 | 13413.7 |
| hamp domain-containing histidine kinase | H9N25_20850 | Q08408 | Positive | 5059803 - 5061623 | 69110.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

