Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dead/deah box helicase | H9N25_20755 | P25888 | Positive | 5037287 - 5038507 | 45493.4 |
| aec family transporter | H9N25_20760 | Q58437 | Positive | 5038579 - 5039490 | 33160.2 |
| aminopeptidase | H9N25_20765 | Q48543 | Negative | 5039784 - 5040977 | 43919.7 |
| l-serine ammonia-lyase | H9N25_20770 | O86564 | Negative | 5041081 - 5042508 | 51210.4 |
| rdd family protein | H9N25_20775 | Not Available | Positive | 5042622 - 5043113 | 18433.4 |
| mgtc/sapb family protein | H9N25_20780 | P0AFV3 | Negative | 5043094 - 5043753 | 24384.0 |
| porp/sprf family type ix secretion system membrane protein | H9N25_20785 | Not Available | Negative | 5043777 - 5044796 | 37710.5 |
| pkd domain-containing protein | H9N25_20790 | Q58863 | Negative | 5044797 - 5050748 | 209809.0 |
| chaperonin groel | H9N25_20795 | Q11U19 | Negative | 5051048 - 5052682 | 57590.3 |
| co-chaperone groes | H9N25_20800 | B3QPB6 | Negative | 5052782 - 5053072 | 10200.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

