Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-70 family rna polymerase sigma factor | H9N25_20705 | O07582 | Negative | 5030497 - 5031075 | 22409.9 |
| duf4197 domain-containing protein | H9N25_20710 | Not Available | Positive | 5031288 - 5032049 | 27535.7 |
| pd40 domain-containing protein | H9N25_20715 | Not Available | Positive | 5032188 - 5033126 | 33796.2 |
| 2-dehydropantoate 2-reductase | H9N25_20720 | O31717 | Positive | 5033145 - 5034071 | 33824.1 |
| rna polymerase sigma factor | H9N25_20725 | Q7AKG9 | Positive | 5034195 - 5034746 | 21686.3 |
| hypothetical protein | H9N25_20730 | Not Available | Positive | 5034760 - 5035110 | 13651.7 |
| hypothetical protein | H9N25_20735 | Not Available | Positive | 5035688 - 5035954 | 10408.0 |
| hypothetical protein | H9N25_20740 | Not Available | Positive | 5035960 - 5036199 | 9216.86 |
| hypothetical protein | H9N25_20745 | O31853 | Positive | 5036204 - 5036596 | 14513.4 |
| hsp20/alpha crystallin family protein | H9N25_20750 | P80485 | Positive | 5036650 - 5037102 | 17014.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

