Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_20655 | Not Available | Negative | 5018638 - 5020425 | 66930.6 |
| trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miab | H9N25_20660 | Q11U26 | Positive | 5020948 - 5022363 | 53076.1 |
| sigma 54-interacting transcriptional regulator | H9N25_20665 | P10046 | Positive | 5022430 - 5023677 | 46596.6 |
| lpte family protein | H9N25_20670 | Not Available | Positive | 5023819 - 5024331 | 18732.5 |
| hypothetical protein | H9N25_20675 | Not Available | Positive | 5024404 - 5025462 | 40321.2 |
| preprotein translocase subunit secg | H9N25_20680 | Not Available | Positive | 5025477 - 5025839 | 12107.9 |
| sensor histidine kinase | H9N25_20685 | P23545 | Positive | 5025970 - 5026995 | 38996.4 |
| duf47 domain-containing protein | H9N25_20690 | O34454 | Positive | 5027239 - 5027880 | 24302.1 |
| inorganic phosphate transporter | H9N25_20695 | O30499 | Positive | 5027893 - 5028903 | 35652.4 |
| carboxypeptidase-like regulatory domain-containing protein | H9N25_20700 | Not Available | Negative | 5029200 - 5030504 | 46968.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

