Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| doxx family membrane protein | H9N25_20605 | Not Available | Positive | 5007126 - 5007967 | 30779.2 |
| hybrid sensor histidine kinase/response regulator | H9N25_20610 | Q45614 | Positive | 5008072 - 5009205 | 43033.9 |
| response regulator | H9N25_20615 | Q5A599 | Positive | 5009225 - 5012809 | 133790.0 |
| response regulator | H9N25_20620 | B2SB45 | Positive | 5012928 - 5013299 | 13505.7 |
| protein-glutamate o-methyltransferase cher | H9N25_20625 | Q88GG4 | Positive | 5013303 - 5014121 | 31922.3 |
| chemotaxis protein cheb | H9N25_20630 | P62642 | Positive | 5014106 - 5014690 | 21260.5 |
| response regulator | H9N25_20635 | A6X580 | Positive | 5014710 - 5015075 | 13521.0 |
| duf3137 domain-containing protein | H9N25_20640 | Not Available | Negative | 5015192 - 5016148 | 36150.5 |
| lema family protein | H9N25_20645 | A8AVK0 | Negative | 5016148 - 5016705 | 20587.9 |
| doxx family membrane protein | H9N25_20650 | Not Available | Negative | 5016756 - 5018569 | 67668.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

