Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_20555 | Not Available | Negative | 4998609 - 4999091 | 18605.4 |
| sigma-70 family rna polymerase sigma factor | H9N25_20560 | Q45585 | Negative | 4999088 - 4999669 | 22423.9 |
| multidrug efflux smr transporter | H9N25_20565 | Q65KV0 | Negative | 5000526 - 5000846 | 11756.7 |
| crp/fnr family transcriptional regulator | H9N25_20570 | Not Available | Negative | 5000916 - 5001482 | 21746.1 |
| hypothetical protein | H9N25_20575 | Not Available | Positive | 5001620 - 5001982 | 12980.3 |
| doxx family membrane protein | H9N25_20580 | Not Available | Positive | 5002002 - 5003098 | 38323.9 |
| hotdog fold thioesterase | H9N25_20585 | P77781 | Negative | 5003116 - 5003538 | 15547.0 |
| dinb family protein | H9N25_20590 | Not Available | Negative | 5003528 - 5004037 | 19770.6 |
| hamp domain-containing histidine kinase | H9N25_20595 | Q04850 | Negative | 5004018 - 5005226 | 46596.2 |
| glutamate--trna ligase | H9N25_20600 | A6L0E8 | Positive | 5005451 - 5006959 | 56597.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

