Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine phosphatase family protein | H9N25_20505 | Not Available | Negative | 4987434 - 4987934 | 18790.7 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | H9N25_20510 | B5YFU5 | Negative | 4987972 - 4989018 | 38874.6 |
| chitinase | H9N25_20515 | O81862 | Negative | 4989020 - 4990045 | 37615.9 |
| d-alanyl-d-alanine carboxypeptidase | H9N25_20520 | Q86I79 | Negative | 4990076 - 4991404 | 50164.5 |
| aspartyl protease family protein | H9N25_20525 | Q3T0X8 | Positive | 4991614 - 4992702 | 40614.3 |
| zinc-dependent metalloprotease | H9N25_20530 | Not Available | Positive | 4992795 - 4995299 | 93336.1 |
| phosphodiester glycosidase family protein | H9N25_20535 | Q8BJ48 | Positive | 4995540 - 4996406 | 32013.5 |
| hypothetical protein | H9N25_20540 | Not Available | Positive | 4996691 - 4997617 | 35377.7 |
| cold-shock protein | H9N25_20545 | O30875 | Positive | 4997722 - 4997913 | 6928.29 |
| serine hydrolase family protein | H9N25_20550 | Not Available | Positive | 4997993 - 4998520 | 19555.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

