Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | H9N25_20455 | P0C0E3 | Negative | 4976852 - 4977466 | 22840.4 |
| gnat family n-acetyltransferase | H9N25_20460 | P26945 | Negative | 4977472 - 4977933 | 16809.0 |
| acyl-acp--udp-n-acetylglucosamine o-acyltransferase | H9N25_20465 | Q9PEI5 | Negative | 4977963 - 4978748 | 28560.5 |
| bifunctional udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine deacetylase/3-hydroxyacyl-acp dehydratase | H9N25_20470 | Q8A015 | Negative | 4978748 - 4980160 | 52278.6 |
| udp-3-o-(3-hydroxymyristoyl)glucosamine n-acyltransferase | H9N25_20475 | A0M2A1 | Negative | 4980150 - 4981226 | 38663.8 |
| hd domain-containing protein | H9N25_20480 | P39651 | Negative | 4981349 - 4982572 | 46819.5 |
| pglz domain-containing protein | H9N25_20485 | P35163 | Positive | 4982684 - 4984237 | 60399.4 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex atpase subunit type 1 tsae | H9N25_20490 | O05515 | Positive | 4984417 - 4984833 | 15809.8 |
| alanine dehydrogenase | H9N25_20495 | Q6LX40 | Positive | 4984907 - 4986133 | 44526.1 |
| m15 family metallopeptidase | H9N25_20500 | P77790 | Positive | 4986295 - 4986978 | 26160.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

