Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| class i sam-dependent methyltransferase | H9N25_02005 | Q91FT7 | Positive | 522761 - 523384 | 24256.4 |
| polysaccharide deacetylase family protein | H9N25_02010 | Q6GDD6 | Negative | 523298 - 524116 | 30972.6 |
| colanic acid biosynthesis acetyltransferase wcaf | H9N25_02015 | P0ACD2 | Negative | 524119 - 524670 | 20622.3 |
| hypothetical protein | H9N25_02020 | Not Available | Negative | 524678 - 525298 | 23454.0 |
| hypothetical protein | H9N25_02025 | Not Available | Negative | 525255 - 525410 | 6230.47 |
| glycosyltransferase family 2 protein | H9N25_02030 | P44029 | Negative | 525403 - 526257 | 34078.1 |
| glycosyltransferase | H9N25_02035 | Q4JAK2 | Negative | 526257 - 527435 | 44605.4 |
| hypothetical protein | H9N25_02040 | Not Available | Negative | 527436 - 528830 | 53613.6 |
| glycosyltransferase | H9N25_02045 | Q57287 | Negative | 528831 - 529805 | 37577.9 |
| class i sam-dependent methyltransferase | H9N25_02050 | Q31GD8 | Negative | 529796 - 530461 | 25119.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

