Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| heavy-metal-associated domain-containing protein | H9N25_20405 | Not Available | Negative | 4969128 - 4969670 | 19384.3 |
| hypothetical protein | H9N25_20410 | Not Available | Negative | 4969761 - 4970162 | 14850.5 |
| peptidylprolyl isomerase | H9N25_20415 | Q5XAQ1 | Positive | 4970257 - 4970985 | 27422.3 |
| exodeoxyribonuclease iii | H9N25_20420 | O26314 | Positive | 4971197 - 4971964 | 29631.4 |
| imidazolonepropionase | H9N25_20425 | A0LZE0 | Positive | 4972056 - 4973297 | 44989.2 |
| formimidoylglutamase | H9N25_20430 | P0CZ66 | Positive | 4973290 - 4974249 | 34864.8 |
| hypothetical protein | H9N25_20435 | Not Available | Negative | 4974351 - 4974509 | 6168.36 |
| 5-formyltetrahydrofolate cyclo-ligase | H9N25_20440 | Q89AD6 | Negative | 4974520 - 4975080 | 21607.5 |
| elongation factor p | H9N25_20445 | B8FQ76 | Negative | 4975196 - 4975756 | 20973.8 |
| elongation factor p | H9N25_20450 | Q3ATP1 | Negative | 4975888 - 4976448 | 21252.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

