Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_20355 | Not Available | Negative | 4960695 - 4961882 | 44751.2 |
| aldehyde dehydrogenase family protein | H9N25_20360 | P12693 | Positive | 4962048 - 4963445 | 51516.7 |
| putative metal-dependent hydrolase | H9N25_20365 | Q6HI24 | Positive | 4963566 - 4964090 | 20462.5 |
| hypothetical protein | H9N25_20370 | Not Available | Positive | 4964087 - 4964563 | 18275.9 |
| cation transporter | H9N25_20375 | Not Available | Negative | 4964565 - 4965284 | 26186.5 |
| 4,5-dopa dioxygenase extradiol | H9N25_20380 | P24197 | Negative | 4965537 - 4966361 | 30421.5 |
| ycei family protein | H9N25_20385 | A4VRG3 | Negative | 4966467 - 4967039 | 20844.9 |
| helix-turn-helix transcriptional regulator | H9N25_20390 | P0ACI5 | Negative | 4967230 - 4967790 | 21188.9 |
| duf3347 domain-containing protein | H9N25_20395 | Not Available | Negative | 4967790 - 4968293 | 18416.4 |
| hypothetical protein | H9N25_20400 | Not Available | Negative | 4968319 - 4969131 | 30459.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

