Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 9 protein | H9N25_20305 | P23658 | Negative | 4946330 - 4948834 | 95139.0 |
| tetr/acrr family transcriptional regulator | H9N25_20310 | P94548 | Positive | 4948951 - 4949577 | 23511.9 |
| tolc family protein | H9N25_20315 | Q8G0Y6 | Positive | 4949574 - 4950893 | 48366.3 |
| hlyd family secretion protein | H9N25_20320 | P0DPR6 | Positive | 4950902 - 4951981 | 38663.8 |
| dha2 family efflux mfs transporter permease subunit | H9N25_20325 | P0AEJ1 | Positive | 4951990 - 4953537 | 56004.5 |
| phosphoenolpyruvate carboxylase | H9N25_20330 | Q0AH90 | Positive | 4953800 - 4956385 | 97811.4 |
| hypothetical protein | H9N25_20335 | Not Available | Negative | 4956712 - 4956960 | 8994.81 |
| thioredoxin family protein | H9N25_20340 | Q6Z4I3 | Negative | 4956960 - 4957268 | 11464.8 |
| peroxiredoxin | H9N25_20345 | P21762 | Negative | 4957283 - 4957915 | 23500.6 |
| s9 family peptidase | H9N25_20350 | Q6F3I7 | Negative | 4958129 - 4960513 | 90137.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

