Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phospholipase c, phosphocholine-specific | H9N25_20255 | P15713 | Positive | 4932428 - 4934800 | 88236.7 |
| hypothetical protein | H9N25_20260 | T2KMF4 | Positive | 4934920 - 4937772 | 107890.0 |
| response regulator transcription factor | H9N25_20265 | P55184 | Positive | 4937808 - 4938434 | 23077.8 |
| hypothetical protein | H9N25_20270 | Not Available | Positive | 4938539 - 4938904 | 14015.5 |
| helix-turn-helix transcriptional regulator | H9N25_20275 | O33813 | Positive | 4938909 - 4939775 | 33604.3 |
| tonb-dependent receptor | H9N25_20280 | T2KPJ3 | Positive | 4940065 - 4943178 | 114474.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_20285 | T2KPM5 | Positive | 4943190 - 4944647 | 53960.0 |
| nuclear transport factor 2 family protein | H9N25_20290 | Not Available | Positive | 4944813 - 4945277 | 17399.9 |
| duf2911 domain-containing protein | H9N25_20295 | Not Available | Negative | 4945371 - 4945940 | 21005.5 |
| hypothetical protein | H9N25_20300 | Not Available | Negative | 4946074 - 4946259 | 6677.23 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

