Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dicarboxylate/amino acid:cation symporter | H9N25_20205 | B3PUW1 | Negative | 4915046 - 4916275 | 43827.9 |
| quinolinate synthase nada | H9N25_20210 | B7KBV9 | Negative | 4916329 - 4917327 | 36988.8 |
| l-aspartate oxidase | H9N25_20215 | Q9KPA4 | Positive | 4917778 - 4919364 | 59625.2 |
| gamma carbonic anhydrase family protein | H9N25_20220 | Q9C6B3 | Positive | 4919463 - 4919975 | 18347.2 |
| ig-like domain-containing protein | H9N25_20225 | Not Available | Negative | 4920147 - 4921793 | 62356.9 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmg | H9N25_20230 | Q11PC8 | Negative | 4921915 - 4923777 | 69050.9 |
| abc-f family atp-binding cassette domain-containing protein | H9N25_20235 | O06476 | Negative | 4923946 - 4925805 | 70599.1 |
| rrna maturation rnase ybey | H9N25_20240 | Q11PC9 | Negative | 4926469 - 4926906 | 16918.3 |
| hypothetical protein | H9N25_20245 | Not Available | Negative | 4927085 - 4930402 | 126765.0 |
| family 16 glycosylhydrolase | H9N25_20250 | P45798 | Positive | 4930748 - 4932253 | 57131.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

