Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cpbp family intramembrane metalloprotease | H9N25_20155 | P50730 | Negative | 4905440 - 4906366 | 35147.4 |
| trna dihydrouridine synthase dusb | H9N25_20160 | Q4UNJ4 | Positive | 4906410 - 4907417 | 38009.8 |
| co2+/mg2+ efflux protein apag | H9N25_20165 | B8JAJ1 | Positive | 4907454 - 4907840 | 14581.3 |
| zinc metallopeptidase | H9N25_20170 | O05248 | Negative | 4908534 - 4909229 | 25455.0 |
| fad-binding oxidoreductase | H9N25_20175 | P44732 | Positive | 4909314 - 4910447 | 41972.2 |
| formyltetrahydrofolate deformylase | H9N25_20180 | Q03432 | Negative | 4910674 - 4911513 | 31557.3 |
| dna recombination protein rmuc | H9N25_20185 | Q9I4U3 | Positive | 4911632 - 4913017 | 52402.6 |
| hypothetical protein | H9N25_20190 | Not Available | Negative | 4913245 - 4913484 | 9270.97 |
| hypothetical protein | H9N25_20195 | Not Available | Negative | 4913577 - 4913951 | 13751.9 |
| thiamine-phosphate kinase | H9N25_20200 | O27447 | Negative | 4913952 - 4914992 | 38181.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

