Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2752 domain-containing protein | H9N25_20105 | Not Available | Negative | 4892027 - 4892329 | 11449.0 |
| transcription-repair coupling factor | H9N25_20110 | P37474 | Positive | 4892560 - 4895898 | 126332.0 |
| duf3820 family protein | H9N25_20115 | P0AD41 | Positive | 4896002 - 4896223 | 8546.75 |
| dsba family oxidoreductase | H9N25_20120 | P39598 | Negative | 4896519 - 4897235 | 26997.8 |
| peptidase | H9N25_20125 | Not Available | Negative | 4897320 - 4900016 | 99997.0 |
| 5-methyltetrahydropteroyltriglutamate-- homocysteine s-methyltransferase | H9N25_20130 | A5FJR8 | Positive | 4900544 - 4902877 | 88691.5 |
| acyl-coa thioesterase | H9N25_20135 | P49851 | Positive | 4903162 - 4903548 | 14421.5 |
| methyltransferase domain-containing protein | H9N25_20140 | O05400 | Positive | 4903610 - 4904275 | 24911.7 |
| phosphatidate cytidylyltransferase | H9N25_20145 | Q5HGH0 | Negative | 4904400 - 4905209 | 30447.0 |
| duf2007 domain-containing protein | H9N25_20150 | Not Available | Negative | 4905253 - 4905459 | 7548.93 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

