Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent zinc metalloprotease ftsh | H9N25_20055 | A6LD25 | Positive | 4880464 - 4882485 | 74194.3 |
| lud domain-containing protein | H9N25_20060 | Q5WJD9 | Positive | 4882550 - 4883194 | 24601.6 |
| hypothetical protein | H9N25_20065 | Not Available | Negative | 4883207 - 4883932 | 27050.0 |
| histidine kinase | H9N25_20070 | Q1M799 | Positive | 4884328 - 4886205 | 72615.8 |
| response regulator transcription factor | H9N25_20075 | Q7WZY4 | Positive | 4886214 - 4886855 | 23970.2 |
| ketoacyl-acp synthase iii | H9N25_20080 | Q2N925 | Positive | 4886934 - 4888010 | 39301.3 |
| tetratricopeptide repeat protein | H9N25_20085 | Not Available | Negative | 4888007 - 4889494 | 55771.5 |
| hypothetical protein | H9N25_20090 | Not Available | Negative | 4889669 - 4890412 | 28245.9 |
| nif3-like dinuclear metal center hexameric protein | H9N25_20095 | P54472 | Negative | 4890412 - 4891509 | 40823.1 |
| tm2 domain-containing protein | H9N25_20100 | Not Available | Negative | 4891635 - 4892021 | 14332.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

