Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna processing protein rimm | H9N25_20005 | A6GWI5 | Negative | 4870218 - 4870745 | 20470.2 |
| 30s ribosomal protein s16 | H9N25_20010 | A5FKD9 | Negative | 4870928 - 4871500 | 20298.8 |
| 5'(3')-deoxyribonucleotidase | H9N25_20015 | P66840 | Positive | 4871666 - 4872166 | 19574.4 |
| duf2135 domain-containing protein | H9N25_20020 | P76462 | Negative | 4872320 - 4875382 | 114535.0 |
| heavy metal-binding domain-containing protein | H9N25_20025 | Q8A295 | Positive | 4875556 - 4875879 | 11188.5 |
| 6-phosphofructokinase | H9N25_20030 | Q8A624 | Negative | 4875964 - 4876947 | 35246.4 |
| thioredoxin family protein | H9N25_20035 | Q8DCZ0 | Negative | 4876940 - 4878634 | 61642.6 |
| sugar transporter | H9N25_20040 | Not Available | Negative | 4878783 - 4879232 | 16808.7 |
| biotin--[acetyl-coa-carboxylase] ligase | H9N25_20045 | E0U174 | Negative | 4879240 - 4880016 | 29028.0 |
| ribosome silencing factor | H9N25_20050 | Q9KD89 | Positive | 4880061 - 4880435 | 14092.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

