Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_19955 | Not Available | Negative | 4861054 - 4861689 | 23895.9 |
| nifu family protein | H9N25_19960 | O32119 | Negative | 4861743 - 4861988 | 8721.63 |
| mrp/nbp35 family atp-binding protein | H9N25_19965 | P53383 | Negative | 4862023 - 4863099 | 38348.5 |
| transglycosylase domain-containing protein | H9N25_19970 | O24849 | Positive | 4863231 - 4865393 | 80886.8 |
| hypoxanthine phosphoribosyltransferase | H9N25_19975 | P37472 | Positive | 4865534 - 4866076 | 20017.4 |
| phosphatidylserine decarboxylase family protein | H9N25_19980 | Q11Y69 | Positive | 4866132 - 4866791 | 24949.3 |
| mechanosensitive ion channel family protein | H9N25_19985 | O66994 | Negative | 4867102 - 4868277 | 43984.9 |
| 50s ribosomal protein l19 | H9N25_19990 | A6LEF2 | Negative | 4868348 - 4868695 | 13039.8 |
| trna (guanosine(37)-n1)-methyltransferase trmd | H9N25_19995 | A5FHV7 | Negative | 4868834 - 4869508 | 25031.0 |
| hypothetical protein | H9N25_20000 | Not Available | Negative | 4869560 - 4870171 | 23731.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

