Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mosc domain-containing protein | H9N25_01955 | P75863 | Negative | 510099 - 510914 | 30899.2 |
| mechanosensitive ion channel | H9N25_01960 | Q57362 | Negative | 510926 - 513286 | 89326.5 |
| duf2807 domain-containing protein | H9N25_01965 | Not Available | Negative | 513679 - 514278 | 21223.6 |
| circadian clock protein kaic | H9N25_01970 | P73860 | Positive | 514770 - 516521 | 64966.6 |
| circadian clock protein kaib | H9N25_01975 | P73859 | Positive | 516518 - 516808 | 10712.3 |
| circadian clock protein kaib | H9N25_01980 | P73859 | Positive | 516811 - 517125 | 11425.9 |
| pas domain s-box protein | H9N25_01985 | Q45614 | Positive | 517129 - 518889 | 66460.4 |
| hypothetical protein | H9N25_01990 | Not Available | Negative | 519221 - 519970 | 27950.5 |
| doxx family membrane protein | H9N25_01995 | Q6GN01 | Positive | 520408 - 521675 | 45845.1 |
| dipeptidase pepe | H9N25_02000 | Q93RZ5 | Negative | 521796 - 522491 | 25773.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

