Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_19855 | Not Available | Positive | 4839063 - 4839341 | 11331.0 |
| duf3078 domain-containing protein | H9N25_19860 | Not Available | Positive | 4839436 - 4840461 | 38742.5 |
| hypothetical protein | H9N25_19865 | Not Available | Negative | 4840469 - 4841200 | 28203.0 |
| helix-turn-helix transcriptional regulator | H9N25_19870 | P40883 | Positive | 4841297 - 4842286 | 37364.7 |
| hypothetical protein | H9N25_19875 | Not Available | Negative | 4842395 - 4844815 | 92905.8 |
| signal recognition particle protein | H9N25_19880 | P37105 | Positive | 4845008 - 4846345 | 48672.5 |
| yifb family mg chelatase-like aaa atpase | H9N25_19885 | P45049 | Positive | 4846657 - 4848195 | 56070.8 |
| gxxexxy protein | H9N25_19890 | Not Available | Positive | 4848350 - 4848760 | 15179.6 |
| hypothetical protein | H9N25_19895 | Not Available | Positive | 4849107 - 4849481 | 13515.0 |
| crp/fnr family transcriptional regulator | H9N25_19900 | Not Available | Positive | 4849594 - 4850163 | 22106.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

