Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | H9N25_19805 | P96613 | Positive | 4827215 - 4828516 | 47970.9 |
| tonb-dependent receptor | H9N25_19810 | Q1CBU1 | Negative | 4828745 - 4831603 | 102686.0 |
| gliding motility lipoprotein gldh | H9N25_19815 | A0M6E0 | Negative | 4831769 - 4832260 | 18901.0 |
| hypothetical protein | H9N25_19820 | P37541 | Negative | 4832229 - 4833770 | 57419.1 |
| hypothetical protein | H9N25_19825 | P09122 | Negative | 4833772 - 4834920 | 42957.8 |
| doxx family membrane protein | H9N25_19830 | Q11X87 | Positive | 4835476 - 4835893 | 15373.7 |
| o-methyltransferase | H9N25_19835 | Q00719 | Positive | 4835901 - 4836536 | 24010.0 |
| glucosaminidase domain-containing protein | H9N25_19840 | P37710 | Positive | 4836618 - 4837292 | 25621.6 |
| glucosaminidase domain-containing protein | H9N25_19845 | O32083 | Positive | 4837378 - 4838220 | 32124.9 |
| hypothetical protein | H9N25_19850 | Not Available | Positive | 4838269 - 4839021 | 28533.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

